Read Allies and Enemies: How the World Depends on Bacteria Online

Authors: Anne Maczulak

Tags: #Science, #Reference, #Non-Fiction

Allies and Enemies: How the World Depends on Bacteria (32 page)

BOOK: Allies and Enemies: How the World Depends on Bacteria
11.4Mb size Format: txt, pdf, ePub
ads
Chapter 4

Print

Antonioli, P., G. Zapparoli, P. Abbruscato, C. Sorlini, G. Ranalli, and P.G. Righetti. “Art-loving Bugs: The Resurrection of Spinello Aretino from Pisa’s Cemetery.” Proteomics 5 (2005): 2453-59.

Crichton, Michael. The Andromeda Strain. New York: Alfred A.

Knopf, 1987.

Mann, Thomas. Death in Venice. 1912.

Maugham, W. Somerset. The Painted Veil, 1925.

Rao, T. S., S. N. Sairam, B. Viswanathan, and K. V. K. Nair. “Carbon

Steel Corrosion by Iron Oxidizing and Sulphate Reducing Bacteria in

a Freshwater Cooling System. Corrosion Science 42 (2000): 1417-31.

Internet

Arenskötter, M., D. Baumeister, M. M. Berekaa, G. Pötter, R. M.

Kroppenstedt, A. Linos, and A. Steinbüchel. “Taxonomic

Characterization of Two Rubber Degrading Bacteria Belonging to

 

bacteria rule references

189

the Species Gordonia polyisoprevivorans and Analysis of Hyper

Variable Regions of 16S rDNA Sequences.” FEMS Microbiology

Letters 205 (2001): 277-81. http://www3.interscience.wiley.com/

cgi-bin/fulltext/119020815/PDFSTART?CRETRY=1&SRETRY=0.

Bröker, D., D. Dietz, M. Arenskötter, and A. Steinbüchel. “The

Genomes of the Non-clearing-zone-forming Species Gordonia

polyisoprevivorans and Gordonia westfalica Harbor Genes Expressing Lcp Activity in Streptomyces Strains.” Applied and Environmental Microbiology 74 (2008): 2288-97. http://www.ncbi.

nlm.nih.gov/pubmed/18296529.

Cappitelli, Francesca, Lucia Toniolo, Antonio Sansonetti, Davide

Gulotta, Giancarlo Ranalli, Elisabetta Zanardini, and Claudia Sorlini.

“Advantages of Using Microbial Technology over Traditional

Chemical Technology in Removal of Black Crusts from Stone

Surfaces of Historical Monuments.” Applied and Environmental

Microbiology 73 (2007): 5671-75. http://aem.asm.org/cgi/reprint/

73/17/5671.pdf.

 

Chalke, H. D. “The Impact of Tuberculosis on History, Literature

and Art.” Medical History 6 (1962): 301-18. http://www.ncbi.nlm.nih.

gov/pmc/articles/PMC1034755.

Ciferri, Orio. “Microbial Degradation of Paintings.” Applied and

Environmental Microbiology 65 (1999): 879-85. http://www.ncbi.

nlm.nih.gov/pmc/articles/PMC91117.

Dardes, Kathleen, and Andrea Rothe, eds. The Structural

Conservation of Panel Paintings. The Getty Conservation Institute, 1995. http://www.getty.edu/conservation/publications/pdf_

publications/panelpaintings1.pdf.

Eureka Science News. “Biotech Scientists Team with Curators to

Stem Decay of World’s Art, Cultural Heritage.” February 8, 2009.

http://esciencenews.com/articles/2009/02/08/biotech.scientists.team.

with.curators.stem.decay.worlds.art.cultural.heritage.

Gupta, M., and D. Alcid. “A Rubber-degrading Organism Growing

from a Human Body.” International Journal of Infectious Diseases

12 (2008): e332-e333. http://www.ijidonline.com/article/

S1201-9712(08)01020-5/abstract.

 

190

allies and enemies

Gupta, M., D. Prasad, H. S. Khara, and D. Alcid. “A Rubber-degrading Organism Growing from a Human Body.” Journal of

Infectious Diseases 14 (2010): e75-e76. http://www.ncbi.nlm.nih.gov/

pubmed/19501006.

Harmon, Katherine. “The Science of Saving Art: Can Microbes

Protect Masterpieces?” Scientific American, February 9, 2009.

Jendrossek, D., G. Tomasi, and R. M. Kroppenstedt. “Bacterial

Degradation of Natural Rubber: A Privilege of Actinomycetes?”

FEMS Microbiology Letters 150 (1997): 179-88. http://grande.nal.

usda.gov/ibids/index.php?mode2=detail&origin=ibids_references&

therow=138921.

Kerksiek, Kristen. “The Art of Infection.” Infection Research,

October 29, 2009. http://www.infection-research.de/perspectives/

detail/pressrelease/the_art_of_infection.

Linos, Alexandros, Mahmoud M. Berekaa, Alexander Steinbüchel,

Kwang Kyu Kim, Cathrin Spöer, and Reiner M. Kroppenstedt.

 

“Gordonia westfalica sp. nov., a Novel Rubber-degrading Actinomycete.” International Journal of Systematic and Evolutionary

Microbiology 52 (2002): 1133-39. http://ijs.sgmjournals.org/cgi/

reprint/52/4/1133.pdf.

Mullis, Kary. “The Polymerase Chain Reaction.” Nobel Prize

lecture, December 8, 1993. http://nobelprize.org/nobel_prizes/

chemistry/laureates/1993/mullis-lecture.html.

Murray, John F. “A Century of Tuberculosis.” American Journal of

Respiratory and Critical Care Medicine 169 (2004): 1184-86. http:/

ajrccm.atsjournals.orgcgi/content/full/169/11/1181#FIG4.

Rose, Karsten, and Alexander Steinbüchel. “Biodegradation of

Natural Rubber and Related Compounds: Recent Insights into a

Hardly Understood Catabolic Capability of Microorganisms.”

Applied and Environmental Microbiology 71 (2005): 2803-12. http:

//aem.asm.org/cgi/content/full/71/6/2803#T1.

Stephenson, Shauna. “Thermus aquaticus.” Wyoming Tribune Eagle, August 17, 2007. http://www.wyomingnews.com/articles/2007/08/17/

outdoors/01out_08-15-07.txt.

 

bacteria rule references

191

Chapter 5

Print

Lovelock, James E. Gaia: A New Look at Life on Earth. Oxford

University Press, 2000.

Internet

Chung, King-Thom, and Christine L. Case. “Sergei Winogradsky:

Founder of Soil Microbiology.” Society for Industrial Microbiology

News 51 (2001): 133-35. http://www.skylinecollege.edu/case/envmic/

winogradsky.pdf.

Gemerden, Hans van. “Diel Cycle of Metabolism of Phototrophic

Purple Sulfur Bacteria in Lake Cisó (Spain).” Limnology and

Oceanography 30 (1985): 932-43. http://www.jstor.org/pss/2836576.

Guerrero, Ricardo, Carlos Pedrós-Alió, Isabel Esteve, Jordi Mas,

David Chase, and Lynn Margulis. “Predatory Prokaryotes: Predation

 

and Primary Consumption Evolved in Bacteria.” Proceedings of the

National Academy of Sciences 83 (1986): 2138-42. http://www.ncbi.

nlm.nih.gov/pmc/articles/PMC323246/pdf/pnas00311-0181.pdf.

Pedrós-Alió, Carlos, Emilio Montesinos, and Ricardo Guerrero.

“Factors Determining Annual Changes in Bacterial Photosynthetic

Pigments in Holomictic Lake Cisó, Spain.” Applied and Environmental Microbiology 46 (1983): 999-1006. http://aem.asm.org/cgi/

reprint/46/5/999.

Chapter 6

Print

Amici, A., M. Bazzicalupo, E. Gallori, and F. Rollo. “Monitoring a

Genetically Engineered Bacterium in a Freshwater Environment by

Rapid Enzymatic Amplification of Synthetic DNA ‘Number-plate.’ ”

Applied Microbiology and Biotechnology 36 (1991): 222-27.

 

192

allies and enemies

Emiliani, Cesare. Planet Earth. Cosmology, Geology, and the

Evolution of Life and Environment. Cambridge University Press,

1992.

Gold, Thomas. The Deep Hot Biosphere. Springer-Verlag, 1999.

Meckel, Richard A. Save the Babies: American Public Health Reform

and the Prevention of Infant Mortality, 1850-1929. Johns Hopkins University Press, 1990.

Rifkin, Jeremy. The Biotech Century: Harnessing the Gene and

Remaking the World. Tarcher/Putnam, 1998.

Robbins-Roth, Cynthia. From Alchemy to IPO. Perseus

Publishing, 2000.

Internet

Anderson, A. J., and E. A. Dawes. “Occurrence, Metabolism,

Metabolic Role, and Industrial Uses of Polyhydroxyalkanoates.”

Microbiological Reviews

 

54 (1990): 450-72. http://www.ncbi.nlm.nih.

gov/pmc/articles/PMC372789.

Brand, David. “Gold Finds Our Deep Hot Biosphere Teeming with

Life—And Controversy.” Cornell Chronicle, January 28, 1999. http:/

www.news.cornell.educhronicle/99/1.28.99/Gold-book.html.

Budsberg, K. J., C. F. Wimpee, and J. F. Braddock. “Isolation and

Identification of Photobacterium phosphoreum from an Unexpected Niche: Migrating Salmon.” Applied and Environmental Microbiology 69 (2003): 6938-42. http://www.ncbi.nlm.nih.gov/pmc/

articles/PMC262280/#r20.

Dagert, M., and S. D. Ehrlich. “Prolonged Incubation in Calcium

Chloride Improves the Competence of Escherichia coli Cells.” Gene 6 (1979): 23-38. http://www.sciencedirect.com/science?_ob=

ArticleURL&_udi=B6T39-47W0K6H-53&_user=10&_rdoc=1&_

fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStr

Id=1080165555&_rerunOrigin=google&_acct=C000050221&_

version=1&_urlVersion=0&_userid=10&md5=4e6ef6491becd14975

cd51be5be6f7be.

 

bacteria rule references

193

Food and Agricultural Organization of the United Nations.

“Hydrogen Production.” Chap. 5 in Renewable Biological Systems

for Alternative Sustainable Energy Production. Edited by Kasuhisha Miyamoto. FOA, 1997. http://www.fao.org/docrep/w7241e/

w7241e0g.htm#5.2%20biophotolysis%20of%20water%20by%20

microalgae%20and%20cyanobacteria.

Garcia, Belén, Elías R. Olivera, Baltasar Miñambres, Martiniano

Fernández-Valverde, Librada M. Cañedo, María A. Prieto, José L.

Garcia, María Martínez, and José M. Luengo. “Novel Biodegradable

Aromatic Plastics from a Bacterial Source.” Journal of Biological

Chemistry 41 (1999): 29228-41. http://www.jbc.org/content/274/41/

29228.full.pdf.

Geographical. “Biotech Could Make Chemical Production Carbon

Neutral.” March 2008. http://findarticles.com/p/articles/mi_hb3120/

is_3_80/ai_n29416979.

Human Genome Project. http://www.ornl.gov/sci/techresources/

Human_Genome/project/about.shtml.

 

Irrgang, Karl, and Ulrich Sonnenborn. The Historical Development

of Mutaflor Therapy. Herdecke, Germany: Ardeypharm GMBH,

1988. http://www.ardeypharm.de/pdfs/en/mutaflor_historical_e.pdf.

Kelly, Michael. “Earthly Cave Bacteria Hint at Mars Life.”

Discovery News, May 8, 2009. http://dsc.discovery.com/news/2009/

05/08/cave-bacteria-mars.html.

Kotlar, Hans Kristian. “Can Bacteria Rescue the oil Industry?” The

Scientist 23 (2009): 30. http://www.the-scientist.com/article/display/

55375/;jsessionid=6CE545DF031C7AC0C35910887AB34FC8.

Mandel, M., and A. Higa. “Calcium-dependent Bacteriophage DNA

Infection.” Journal of Molecular Biology 53 (1970): 159-62.

Shulman, Stanford T., Herbert C. Friedmann, and Ronald H. Sims.

“Theodor Escherich: The First Pediatric Infectious Diseases Physician?” Clinical Infectious Diseases 45 (2007): 1025-29. http://www.

journals.uchicago.edu/doi/pdf/10.1086/521946?cookieSet=1.

 

194

allies and enemies

Singh, Mamtesh, Sanjay K. S. Patel, and Vipin C. Kalia. “Bacillus

subtilis as a Potential Producer for Polyhydroxyalkanoates.” Microbial Cell Factories 8 (2009): 38-49. http://www.microbialcellfactories.com/

content/pdf/1475-2859-8-38.pdf.

Society for General Microbiology. “E. coli K-12: Joshua Lederberg.”

Microbiology Today 31, August 2004. http://www.sgm.ac.uk/pubs/

micro_today/pdf/080402.pdf.

Williams, David R. “Evidence of Ancient Martian Life in Meteorite

ALH84001.” NASA, January 9, 2005. http://nssdc.gsfc.nasa.gov/

planetary/marslife.html.

Chapter 7

Print

Deffeyes, Kenneth S. Hubbert’s Peak: The Impending World Oil

Shortage. Princeton, NJ: Princeton University Press, 2001.

 

Hackstein, Johannes H. P., and Claudius K, Stumm. “Methane

Production in Terrestrial Arthropods.” Proceedings of the National

Academy of Sciences 71 (1994): 5441-45.

Lynn, Denis H. The Ciliated Protozoa: Characterization,

Classification, and Guide to the Literature. Springer Science, 2008.

Reisner, Erwin, Juan C. Fontecilla-Camps, and Fraser A. Armstrong.

“Catalytic Electrochemistry of a [NiFeSe]-hydrogenase on TiO and

2

Demonstration of Its Suitability for Visible Light-driven H2

Production.” Chemical Communications 7 (2009): 550-52.

Shah, Sonia. Crude: The Story of Oil. New York: Seven Stories

Press, 2004.

Internet

Charlson, Robert J., James E. Lovelock, Meinrat O. Andreae, and

Stephen G. Warren. “Oceanic Phytoplankton, Atmospheric Sulphur,

Cloud Albedo and Climate.” Nature 326 (1987): 655-61.

 

bacteria rule references

195

Green Car Congress. “Researchers Develop Bacterial Enzyme-Based

Catalyst for Water-Gas Shift Reaction at Ambient Conditions; New

Thinking About Catalyst Design.” News release, September 22, 2009.

http://www.greencarcongress.com/2009/09/rbio-wgs-20090922.html.

Harten, Alan. “Bacteria that Makes Hydrogen Fuel.” Fair Home,

January 15, 2009. http://www.fairhome.co.uk/2009/01/15/bacteria—

that-makes-hydrogen-fuel.

Henstra, Anne M., and Alfons J. M. Stams. “Novel Physiological

Features of Carboxydothermus hydrogenoformans and Thermo—

terrabacterium ferrireducans.” Applied and Environmental

Microbiology 70 (2004): 7236-40. http://www.ncbi.nlm.nih.gov/pmc/

articles/PMC535181.

Highlights in Chemical Technology. “Sun Shines on a Solution for

Hydrogen Production.” December 8, 2008. http://www.rsc.org/

Publishing/ChemTech/Volume/2009/02/sun_shines_hydrogen.asp.

Kiene, Ronald P. “Dimethyl Sulfide Production from Dimethy—

 

lsulfoniopropionate in Coastal Seawater Samples and Bacterial

Cultures.” Applied And Environmental Microbiology 56 (1990):

3292-97.

Ocampo, R., H. J. Callot, and P. Albrecht. “Evidence of Porphyrins

of Bacterial and Algal Origin in Oil Shale.” Chap. 3 in Metal

Complexes in Fossil Fuels. American Chemical Society, 1997.

http://pubs.acs.org/doi/abs/10.1021/bk-1987-0344.ch003.

PhysOrg.com. “Food from Fuel Waste: Bacteria Provide Power.”

http://www.physorg.com/news135482832.html.

Rasmussen, Birger, Tim S. Blake, Ian R. Fletcher, and Matt R.

Kilburn. “Evidence for Microbial Life in Synsedimentary Cavities

from 2.75 Ga Terrestrial Environments.” Geology 37 (2009): 423-26.

Rawal, B. D., and A. M. Pretorius. “Nanobacterium sanguineum—

Is it a New Life-form in Search of Human Ailment or Commensal:

Overview of Its Transmissibility and Chemical Means of Interven—

tion.” Medical Hypotheses 65 (2005): 1062-66. http://www.ncbi.nlm.

nih.gov/pubmed/16122881.

 

196

allies and enemies

Savage, Neil. “Making Gasoline from Bacteria.” MIT Technology

Review, August 1, 2007. http://www.technologyreview.com/

Biztech/19128.

Schaechter, Moselio, John L. Ingraham, and Frederick C.

Neidhardt. Microbe. American Society for Microbiology Press, 2006.

ScienceDaily. “Fuel from Bacteria is One Step Closer.” August 8, 2008. http://www.sciencedaily.com/releases/2008/08/

080806113141.htm.

SpaceRef Interactive. “NASA’s Johnson Space Center to Study

Nanobacteria.” Press release, September 13, 2004. http://www.

spaceref.com/news/viewpr.html?pid=15024.

U.S. Environmental Protection Agency. http://www.epa.gov.

Zimmer-Faust, Richard K., Mark P. de Souza, and Duane C. Yoch.

“Bacterial Chemotaxis and Its Potential Role in Marine

Dimethylsulfide Production and Biogeochemical Sulfur Cycling.”

Limnology and Oceanography 41 (1996): 1330-34.

 

ZoBell, Claude E. “Contributions of Bacteria to the Origin of Oil.”

Presented at World Petroleum Congress, The Hague, The Netherlands, May 28-June 6, 1951. http://www.onepetro.org/mslib/servlet/

onepetropreview?id=WPC-4029&soc=WPC&speAppNameCookie=

ONEPETRO.

 

Index

16S rRNA analysis, 22-23

Altamira cave paintings,

decomposition of, 95

a

amensalism, 122

Amgen, 108

ABC transporters, 74-75

amino acids, 101-102

acetic acids, 152

aminoglycoside, 74

acid rain, 159

amphotericin B, 64

acidic environments, 11, 139

amplification, 109-111

acidophiles, 11

amylase, 33

Acremonium, 64

Anabaena, 129, 140

Actinobacteria, 95

anaerobic bacteria

Actinomyces, 95

in mouth, 27

adaptability of bacteria, 73, 126

 

on skin, 27

adaptive mutations, 63

anaerobic blooms, 141

adenine, 100

anaerobic chambers, 169

adherence, as survival

anaerobic fermentations, 146

mechanism, 125

anaerobic lakes, 141

aerobic bacteria in mouth, 27

anaerobic microbiology, 169-170

agar in pure cultures, 19-20

ancient societies

agar plates in serial dilution, 166

hygiene in, 38-39

agriculture

infectious disease in, 37-43

antibiotic-resistant bacteria in, 73

The Andromeda Strain (Crichton),

antibiotics in, 66-68

90-91

biotechnology in, 114

animal cloning, 109

protein production, 131-135

animalcules, 2

ague, 69

anthrax, 38, 40, 48, 116-117

Al Husseini, Sadad I., 148

antibiotic-resistant bacteria, 31, 64,

Alcaligenes eutrophus, 118

73-81

algae, 2, 96

in agriculture industry, 66-67

algae blooms, 140

archaea, 12

ALH 84001 (meteorite), 161

antibiotics, 64-68

aliquots, 166

adaptation to, 126

alkaliphiles, 11

in agriculture industry, 66-68

197

 

198

index

bacteriocins versus, 64

diversity of, 124-128

combining, 74

DNA transfer, 77-78

discovery pace of, 103

dormancy state, 36-37

natural antibiotics, list of, 64

in ecosystems, 5

penicillin, history of, 68-72

energy production, 154-155

research on, 80-81

environmental relationship with

structure of, 64

Earth, 32, 34

in treated water, 67

in evolution, 145-147

in wastewater, 67

in food production, 35-37

antidiarrhea treatments, 105

in fossil fuels origin, 147-148

antiseptics in World War I, 59

growing, 12, 165

Aphorisms (Hippocrates), 39

anaerobic microbiology,

apocrine sweat glands, 31

169-170

apoptosis, 115

aseptic technique, 170-171

Aquaspirllium magnetotacticum,

counting bacteria, 167-168

9, 161

logarithms, explained, 168-169

archaea, 4, 10, 12, 145, 150

serial dilution, 165, 167

Archaean Era, 130

in human body, 25-32

arginine, 101

in hydrogen production, 149-150

artwork

on Mars, 160-162

destruction by bacteria, 91, 94-96

microbiology, history of, 1-6, 16-19,

during Black Death, 83-84

46-58

refurbishing with bacteria, 96-97

mutations, 63-64

aseptic technique, 15, 170-171

number of, 9

 

atmosphere contents on Mars, 160

pathogens, 5

Austen, Jane, 89

in popular culture

autoclave, 170

artwork during Black Death,

autotrophs, 154

83-84

Azolla, 129

destruction of artwork, 91,

Azotobacter, 33, 132

94-96

in novels, 89-91

b

performing arts and

tuberculosis, 84-89

Bacillus, 24-29, 33, 37, 64

refurbishing artwork, 96-97

B. anthracis, 32, 40, 48, 116-117

protein production, 131-135

B. megaterium, 118

in ruminant digestion, 150-154

B. sphaericus, 37

shape of, 8

B. subtilis, 107

size of, 7

bacitracin, 64

staining, 12, 16-17

bacteria

structure of, 7, 9

adaptability of, 73

survival mechanisms, 9-13, 124-128

advantages over chemical industry,

viruses versus, 3

117-119

bacterial antibiotic efflux pumps, 79

antibiotic-resistant bacteria, 64-67,

bacterial cloning, 106-109

73-81

bacterial communities, 12-16

benefits of, 5, 29

bactericidal, 64

classification systems for, 20-25

bacteriocentricity, 57

comparison with other microbes, 2

bacteriocins, 13, 27, 64

defined, 2

bacteriology. See microbiology

 

index

199

bacteriophages, 60, 76

blue biotechnology, 102

bacteriostatic, 64

body odor, 31-32

Bacterium coli commune, 103

body temperature, maintaining, 29

Bacteroides, 27-30, 151

Borucki, Monica, 37

barophiles, 11

bottom-up control processes, 139

bases (DNA), 100

Boyer, Herbert, 99

basic conditions, bacteria in, 11

Bradyrhizobium, 132

Bazylinsky, Dennis, 161

brass, decomposition of, 93

Bdellovibrio, 126

Brevibacterium, 35

The Bells of St. Mary’s, 86

Broad Street pump (cholera

Beggiatoa, 123, 137

outbreak), 52-53

Beijerinck, Martinus, 121-123, 132

Brock, Thomas, 110

Beijerinckia, 132

Brontë, Charlotte, 87, 89

Berg, Paul, 99-100

Brontë, Emily, 87, 89

Bifidobacterium, 29-30

bronze, decomposition of, 93

binary fission, 107

Bronze Age, 93

binomial nomenclature, 24

Browning, Elizabeth Barrett, 87

bioaerosols, 85

BOOK: Allies and Enemies: How the World Depends on Bacteria
11.4Mb size Format: txt, pdf, ePub
ads

Other books

Heathern by Jack Womack
Under the Same Sky by Joseph Kim
The Light-Kill Affair by Robert Hart Davis
The Summer Bones by Kate Watterson
New Lives by Ingo Schulze
3 of a Kind by Rohan Gavin
Claiming Her Geeks by Eve Langlais
The Beauty Series by Skye Warren